Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs17216657 | chr3:56574431 | T/C | 4.13E-6 | 483 | 16.87 | 12.6 | 8.47 | KM Plot |
| THCA | rs17216747 | chr3:56687851 | T/C | 4.01E-6 | 486 | 16.92 | 12.6 | 8.47 | KM Plot |
| THCA | rs17229010 | chr16:85713210 | G/A | 1.61E-6 | 470 | 16.07 | 16.75 | 33.97 | KM Plot |
| THCA | rs17243517 | chr11:26665695 | T/C | 0.000292 | 488 | 15.83 | 16.62 | 9 | KM Plot |
| THCA | rs17250515 | chr5:65546759 | C/T | 4.64E-10 | 486 | 16.63 | 12.92 | 6.57 | KM Plot |
| THCA | rs17251088 | chr5:65598729 | T/C | 0 | 479 | 16.07 | 16.2 | 11.67 | KM Plot |
| THCA | rs17255304 | chr14:59597337 | G/A | 5.3E-10 | 487 | 15.9 | 16.23 | 5.8 | KM Plot |
| THCA | rs17255311 | chr14:59598931 | C/T | 5.05E-10 | 482 | 15.87 | 16.72 | 5.45 | KM Plot |
| THCA | rs17255332 | chr14:59611735 | G/C | 5.31E-10 | 484 | 15.9 | 16.48 | 6.83 | KM Plot |
| THCA | rs17255402 | chr14:59672118 | G/A | 0 | 487 | 15.9 | 16.4 | 3.53 | KM Plot |
| THCA | rs17255423 | chr14:59694225 | G/C | 0 | 488 | 15.9 | 16.4 | 3.53 | KM Plot |
| THCA | rs17255500 | chr14:59735696 | T/C | 1.4E-8 | 490 | 16.4 | 12.7 | 5.45 | KM Plot |
| THCA | rs17255507 | chr14:59736657 | A/G | 1.4E-8 | 490 | 16.4 | 12.7 | 5.45 | KM Plot |
| THCA | rs17255514 | chr14:59736709 | A/T | 2.19E-7 | 490 | 5.8 | 12.62 | 16.4 | KM Plot |
| THCA | rs17255520 | chr14:59737475 | A/C | 1.4E-8 | 490 | 5.45 | 12.7 | 16.4 | KM Plot |